PROGRAM AREA OVERVIEW --
BIOLOGICAL AND ENVIRONMENTAL RESEARCH

 http://www.er.doe.gov/production/ober/ober_top.html

The Biological and Environmental Research (BER) Program supports fundamental, peer-reviewed research in climate change, environmental remediation, genomics, systems biology, radiation biology, and medical sciences.  BER funds research at public and private research institutions and at DOE laboratories.  BER also supports leading edge research facilities used by public and private sector scientists across a range of disciplines: structural biology, DNA sequencing, functional genomics, climate science, the global carbon cycle, and environmental molecular science.

BER has a particular interest in the following areas:

(1) Climate Change research aimed at the development of advanced climate models to describe and predict the roles of oceans, the atmosphere, ice and land masses on climate over time and research to understand how carbon dioxide moves through the environment, ways to increase its removal from the atmosphere, and its impacts on the Earth’s climate and ecosystems.

(2) Environmental Remediation research aimed at the development of advanced treatment options for nuclear waste, thereby extending the frontiers of biological and chemical methods for remediation, including the use of Earth’s own microbe-based clean-up strategies; this research will yield science-based strategies to reduce the costs, risks, and time for cleanup of DOE sites contaminated from years of weapons research.

(3) Medical Sciences research aimed at the development of advanced imaging and other medical technologies including highly sensitive radiotracer detectors, radiopharmaceuticals, and new technologies such as an artificial retina that will give vision to the blind.

(4) Life Sciences research aimed at the development of innovative solutions along unconventional paths to solve challenges in energy and the environment.  Research is focused on understanding nature’s remarkable array of multi-protein molecular machines and the intricate workings of complex microbial communities; and on enabling us to use and even redesign these microbial machines and communities to produce clean energy, remove carbon dioxide from the atmosphere, and cleanup the environment.  This program also supports research to understand the biological effects of low doses of radiation.

 

20. ATMOSPHERIC MEASUREMENT TECHNOLOGY

World-wide energy production is modifying the chemical composition of the atmosphere and is linked with environmental degradation and human health problems.  The radiative transfer properties of the atmosphere may be changing as well.  Various technological developments are needed for high accuracy and/or long term monitoring of these changes to support a strategy of sustainable and pollution-free energy development for the future.

Grant applications must propose Phase I bench tests of critical technologies.  Critical technologies are those components, materials, equipment, or processes that significantly limit current capabilities in one of the specific subtopics that follow.  For example, grant applications proposing only computer modeling without physical testing will be considered non-responsive.  Grant applications should also describe the purpose and benefits of any proposed teaming arrangements with government laboratories or universities in the technical approach or work plan.  Applications submitted to any of the subtopics should support claims of commercial potential for proposed technologies, (e.g., endorsements from relevant industrial sectors, market analysis, or identification of potential spin-offs).  Grant applications are sought only in the following subtopics:

a. Optical Methods for Ultra-Sensitive Trace Gas Measurements - Continued improvement and development of innovative instrumentation are required for carrying out studies of the chemical processes in the troposphere.  The complexity of the gas mixtures requires specificity and high sensitivity for adequate characterization and monitoring of key species on short time scales (seconds).  Optical methods in the visible, near-infrared, and far-infrared allow this specificity but have suffered from lack of sensitivity for many key gases.  Recent advances in light sources such as Quantum Cascade (QC) lasers and novel absorption techniques such as cavity ring-down spectroscopy (CRDS) are expected to improve the optical methods.  Grant applications are sought to develop advanced optical methods, based on these new technologies, to measure the concentration of tropospheric trace gases in field and aircraft applications.  Of particular interest are small, lightweight instruments that are low in power consumption for use aboard aircraft platforms and at surface measurement sites.  Target species of particular interest include CO, ethene, acetylene, NO, NO2, NO3, nitric acid, formaldehyde, acetaldehyde, sulfur dioxide, nitrous acid, nitrous oxide, isoprene, methacrolein, methyl vinyl ketone, methyl nitrate, hydrogen peroxide, peroxyacetyl nitrate, methyl hydroperoxide, and peracetic acid.

Proposed systems must be capable of providing real-time measurements (i.e., the time for both sampling and response should be less than one minute) and be sufficiently sensitive to detect concentrations as low as 0.01-0.05 parts per billion.  Rapid response instruments that are capable of flux measurements with response times of one second or less are of particular interest.  Grant applications must include detailed descriptions of the instrumentation (including how it will connect to the atmosphere, for the purpose of sampling, without interference from intake losses or other confounding factors) and demonstrate how the proposed technique will result in improved aircraft and field measurement capabilities. 

b. DIAL Water Vapor Profiling System – The accurate, continuous measurement of vertical profiles of water vapor content in the lower atmosphere remains essential for atmospheric research and weather forecasting.  Effective techniques currently range from rawinsondes to sophisticated microwave and optical techniques.  The technology available for differential adsorption lidars (DIALs) to measure vertical profiles of water vapor has been improving.  Grant applications are solicited to develop a highly portable, eye-safe, DIAL system for water vapor profiling that requires limited amounts of power and can operate unattended for long periods of time in the outdoor environment.  Water vapor profiles up to at least two kilometers, during all times of the day, are required; even greater vertical probing distances are needed for some studies.  Temporal resolution of one minute or less and vertical height resolution of 50 m or less are needed for routine observations; even better resolution is required for some special applications, e.g., the vertical profiling of the eddy fluxes of water vapor.  Of particular interest are innovations that take full advantage of current laser and optical filter technology, utilize low-cost components and assembly, and maintain reliability of operation. 

c.  Measurement of the Size Distribution of Water Drops in Clouds – Existing in situ optical instruments, commonly used on research aircraft and at the surface, for measuring the drop size distribution of water clouds suffer inherent limitations.  Because the measurement technology of these instruments (e.g., forward scattering and phase Doppler probes) is based on the light scattering properties of individual drops, the sample volume must be very small to prevent the coincidence of two or more drops from influencing the measurement.  However, in clouds with low drop concentrations, these very small sample volumes make it difficult to obtain statistically significant drop samples when the drops are greater than approximately 50 µm in diameter.  Yet, clouds with low drop concentrations and with drops greater than 50 µm are scientifically very important because this is the regime in which drizzle drops (i.e., drops with diameters from 50 to 200 µm) are formed.  The formation of drizzle can lead to a rapid modification of the cloud drop size distribution, which in turn has a strong influence on a cloud’s radiative properties, especially for marine and arctic stratus clouds.  (For example, the formation of drizzle often leads to a rapid increase in effective drop radius and a corresponding decrease in number concentration, thereby decreasing the reflectance of a cloud.)  Because stratus clouds cover a large portion of the earth, this process has a strong impact on the global radiative budget.  Grant applications are sought to develop new instrument technology that is capable of providing statistically significant measurements of the size distribution of water drops with diameters from 3 to 200 µm in clouds that have a total drop concentration on the order of 10 to 100 per cubic centimeter.  The new instrumentation should be capable of operation on research aircraft, tethered balloons, and on the ground without degradation in performance.  The Phase I project should demonstrate the feasibility of the technology in the laboratory.  In Phase II, an operational sensor should be built and tested on a research aircraft, on a tethered balloon, and on the ground.  Potential commercial applications of the new sensor could extend to measurements of industrial and agricultural sprays.

d. Instrumentation for Characterizing Organic Substances in Aerosol Particles - Important insights into atmospheric pollution can be gained by understanding the characteristics and temporal changes of organic substances in ambient atmospheric aerosol particles with diameters less than about 2.5 micrometers. Grant applications are sought to develop instrumentation for real-time measurements that will: (1) provide accurate estimates of both mass and speciation of organic matter as a function of particle size; (2) detect the changing degree of oxygenation of the organics in aerosols, in order to evaluate the photochemical evolution of the organic aerosol; or (3) identify isotopic and molecular-level tracers of primary and secondary organic carbon, in order to help understand the origins of the fine particulate matter. The instrumentation and associated systems must account for such factors as polarity and water solubility, and must be capable of extended operation in an outdoor, field environment. Methods are needed that will provide accurate measurements of the organic aerosols with minimal artifacts (for example, semivolatile organics are known to absorb and desorb from filter media used to collect the organic aerosol samples) for both field and aircraft operations and for both organic carbon and black carbon. Examples of past approaches include determining 14C/12C isotopic ratios as a means of estimating fossil/biogenic hydrocarbon contributions to the aerosols, optical measurements of the "blackness" of the sample as a means of determining black carbon (soot) contributions, and thermal evolution techniques.

References:

1.      Albrecht, B. A., et al., “Observations of Marine Stratocumulus During FIRE,” Bulletin of American Meteorological Society, 69:618-626, 1988.  (ISSN: 0003-0007)

2.      Bachalo, W. D. and Houser, M. J., “Phase/Doppler Spray Analyzer for Simultaneous Measurements of Drop Size and Velocity Distributions,” Optical Engineering, 23:583-590, 1984.  (ISSN: 0091-3286)

3.      Baumgardner, D., W., et al., “Optical and Electronic Limitations of the Forward-Scattering Spectrometer Probe,” Liquid Particle Size Measurements Techniques:  2nd Volume, pp. 115-127, American Society for Testing and Materials Special Technical Publication, 1990.  (ISBN: 0-8031-1459-1) (ASTM STP 1083) (For more information, see ASTM Web site at:  www.astm.org)

4.      Capasso, C., et al., “Quantum Cascade Lasers:  Band-Structure Engineering Has Led to Fundamentally New Laser with Applications Ranging from Highly Sensitive Trace-Gas Analysis to Communications,” Physics Today, 55:34-40, May 2002.  (ISSN: 0031-9228)

5.      Chou, M. D. and Peng, L., “A Parameterization of the Absorption in the 15 Micron CO2 Spectral Region with Application to Climate Sensitivity Studies,” Journal of the Atmospheric Sciences, 40:2183-2192, September 1983.  (ISSN: 0022-4928)

6.      Daum, P. H., et al., “Analysis of the Processing of Nashville Urban Emissions on July 3 and July 18, 1995 ,” Journal of Geophysical Research, 105(7):9155-9164, April 16, 2000 .  (ISSN: 0148-0227)

7.      Eatough, D. J., et al., “A Multiple-System Multi-Channel Diffusion Denuder Sampler for the Determination of Fine-Particulate Organic Material in the Atmosphere,” Atmospheric Environment, Part A: General Topics, 27A(8):1213-1219, June 1993.  (ISSN: 0004-6981)

8.      Ellingson, R. G., et al., “The Intercomparison of Radiation Codes Used in Climate Models--Long Wave Results,” Journal of Geophysical Research, 96:8929-8953, May 20, 1991 .  (ISSN: 0148-0227)

9.      Fehsenfeld, F. C., et al., “Ground-Based Intercomparison of Nitric Acid Measurement Techniques,” Journal of Geophysical Research, 103(3):3343-3353, 1998.  (ISSN: 0148-0227)

10.  Gogou, A. I., et al., “Determination of Organic Molecular Markers in Marine Aerosols and Sediments:  One Step Flash Chromatography Compound Class Fractionation and Capillary Gas Chromatographic Analysis,” Journal of  Chromatography, 799(1-2):215-231, March 13, 1998 .  (ISSN: 0021-9673)

11.  Grosjean, D., et al., “Evolved Gas Analysis of Secondary Organic Aerosols,” Aerosol Science and Technology, 21(4):306-324, 1994.  (ISSN: 0278-6826)

12.  Hansen, A. D., et al., “The Aethalometer–An Instrument for the Real-Time Measurement of Optical Absorption by Aerosol Particles,” paper presented at the International Conference on Carbonaceous Particles in the Atmosphere, Linz, Austria, September 11, 1983, Berkeley, CA:  Lawrence Berkeley Laboratory, August 1983.  (DOE Report No. LBL-16106) (NTIS Order No. DE84000400.  Available from National Technology Information Service.  See Solicitation General Information and Guidelines, section 7.1)

13.  Lawson, R. P. and Blyth , A. M., “A Comparison of Optical Measurements of Liquid Water Content and Drop Size Distribution in Adiabatic Regions of Florida Cumuli,” Atmospheric Research, 47-48:671-690, 1998.  (ISSN: 0169-8095)

14.  Miloshevich, L. M. and Heymsfield, A. H., “A Balloon-Borne Continuous Cloud Particle Replicator for Measuring Vertical Profiles of Cloud Microphysical Properties: Instrument Design, Performance, and Collection Efficiency Analysis,” Journal of Atmospheric and Oceanic Technology, 14(4):753-768, August 1997.  (ISSN: 0739-0572)

15.  Schiff, H. I., et al., “A Tunable Diode Laser System for Aircraft Measurements of Trace Gases,” Journal of Geophysical Research C, Oceans and Atmospheres, 95(7):10147-10153, June 20, 1990 .  (ISSN: 0196-2256)

16.  Slingo, A., “Sensitivity of the Earth's Radiation Budget to Changes in Low Clouds,” Nature, 343:49-51, 1990.  (ISSN: 0028-0836)

17.  Spicer, C. W., et al., “A Laboratory in the Sky:  New Frontiers in Measurements Aloft,” Journal of Environmental Science and Technology, 28(9):412A-420A, September, 1994.  (ISSN: 0013-936X)

18.  Williams, E. J., et al., “An Intercomparison of Five Ammonia Measurement Techniques,” Journal of Geophysical Research C, Oceans and Atmospheres, 97(11):11591-11611, 1992.  (ISSN: 0196-2256)

19.  Wulfmeyer, V., “Investigation of Turbulent Processes in the Lower Troposphere with Water Vapor DIAL and Radar-RASS,” Journal of the Atmospheric Sciences, 56:1055-1076, April 1999.  (ISSN: 0022-4928)

 

21. CARBON CYCLE MEASUREMENTS OF THE ATMOSPHERE AND THE BIOSPHERE

Eighty-five percent of our nation's energy results from the burning of fossil fuels from vast reservoirs of coal, oil, and natural gas.  These processes add carbon to the atmosphere, principally in the form of carbon dioxide (CO2).  It is important to understand the fate of this excess CO2 in the global carbon cycle in order to assess the terrestrial ecosystem response, the sensitivity of climate, and the potential for sequestration in natural carbon sinks of lands and oceans.  Therefore, improved measurement approaches are needed to quantify carbon changes in components of the global carbon cycle, particularly the terrestrial biosphere, in order to improve understanding and assess the potential for future carbon sequestration.

A DOE working paper on carbon sequestration science and technology describes research needs and technology requirements for sequestering carbon by ocean and terrestrial systems (see Reference 2).  This document calls for substantially improved technology for measuring carbon transformation of the atmosphere and biosphere.  The document also describes advanced sensor technology and measurement approaches that are needed for detecting changes of carbon quantities of terrestrial (including biotic, microbial, and soil components) and oceanic systems, and for evaluating relationships between these carbon cycle components and the atmosphere.

Grant applications submitted to this topic should demonstrate performance characteristics of proposed measurement systems, and show a capability for deployment at field scales ranging from experimental plot size (meters to hectares of land -- with comparable dimensions for marine systems) to nominal dimensions of ecosystems (hectares to square kilometers).  Research to develop miniaturized sensors to determine atmospheric CO2 concentration is also encouraged. In addition, Phase I projects must perform feasibility and/or field tests of proposed measurement systems to assure high degree of reliability and robustness.  Combinations of remote and in situ approaches will be considered, although priority will be given to ideas/approaches for verifying biosphere carbon changes and for estimating carbon sequestration.

Lastly, applicants with an interest in collaboration should be aware of the DOE Consortium for Research on Carbon Sequestration in Terrestrial Ecosystems (CSITE) at Oak Ridge National Laboratory (ORNL), Pacific Northwest National Laboratory (PNNL), and Argonne National Laboratory (ANL). The co-directors are Gary Jacobs (ORNL/e-mail: jacobsgk@ornl.gov) and Blaine Metting (PNNL/e-mail: fb_metting@pnl.gov).   Other possible collaborators include scientists from Texas A&M University, Colorado State University, the University of Washington, North Carolina State University, the Rodale Institute in Pennsylvania, and the Joanneum Research Institute in Austria.  Grant applications are sought only in the following subtopics:

a.  Sensors and Techniques for Measuring Terrestrial Carbon Sinks and SourcesľMeasurement technology is required to quantify carbon sequestration by natural vegetation and ecosystems (i.e., carbon sinks) as well as CO2 emissions to the atmosphere from natural or industrial sources.  Grant applications are sought to develop remote, ground-based sensors and unique measurement techniques (and associated system technology, if appropriate) to detect and quantify annual net carbon changes of terrestrial vegetation for large areas, or to measure and verify the magnitude of CO2 emissions from various sources.  For the measurement of CO2 sinks, the sensor systems or new technology must be applicable for forests, grasslands, shrub lands, agricultural lands, and/or wetlands, and have the capability of producing spatially resolved aggregate estimates of terrestrial carbon changes to an accuracy of 10 to 25 g/m2/yr (or approximately 0.25 tonnes of carbon per hectare per year), with less than 25 percent uncertainty.  For measuring emissions, the apparatus must be located at a point remote from the actual site of CO2  release and provide accuracy estimates for CO2 concentrations of approximately 0.5 ppm or less.  Grant applications are also sought to design and demonstrate a new CO2 analyzer with the following characteristics:  (1) ability to determine the mole fraction of CO2 in dry ambient air to a relative precision of 1 part in 3000 or better in one minute or less; (2) low gas use (30 cc/min or less) to minimize problems due to water vapor and to minimize consumption of reference gases, if employed; (3) robust enough for unattended field deployment for periods of half a year or longer; (4) cost less than $5000 when manufactured in quantity; and (5) not sensitive to motion.

Mechanical sensors must be durable in the full range of normal environmental conditions and exposures,  including exposure to dust, rain, snow, heat, extreme cold, and fog.  Operation in unattended, remote locations for weeks at a time, without degradation of the measurement, is also required; however, daily telecommunication with the system for monitoring performance and detecting potential operational problems would be desirable.  

Proposed approaches, including both mechanical sensors and non-mechanical technology should consist of new, innovative methodologies that are significant advances over conventional scientific approaches used to measure CO2, carbon, and related compounds.  Specifically, the measurement systems should be different from, or substantially augment, existing methods for eddy flux (covariance), routine monitoring of atmospheric CO2 concentrations, or estimating carbon quantities of land and/or ocean constituents of the carbon cycle.  Grant applications proposing in situ or in-stream measurement of flue gas emissions will be declined, as will applications that offer only incremental or marginal improvements over existing measurement systems.

b.  Novel Measurements of Organic Substances and Carbon Isotopes in Terrestrial and Atmospheric MediaľImproved measurement technology is needed to better characterize processes involving carbon transformations of soil, vegetation, and associated ecosystem components and exchanges with the atmosphere.  This includes both carbon content and isotopic measurements of organic matter in soils and other solid substrates, as well as the carbon content of biological tissues in various components (e.g., phytomass, detritus) of terrestrial ecosystems. 

Grant applications are sought for measurements of carbon content in the atmosphere, vegetation, soil, and associated environmental media.  For measurements involving the carbon content of biota and soil, grant applications must demonstrate that these measurements can be used to predict changes in carbon quantities and/or fluxes involving major components of ecosystems, with an accuracy on the order of 10 grams per square meter or less.  Quantification of spatially resolved aggregate estimates of terrestrial carbon changes should have an accuracy of 10 to 25 g/m2/yr (or approximately 0.25 tonnes of carbon per hectare per year), with less than 25 percent uncertainty.

For measurements of atmospheric CO2, development of lightweight (approximately 100 gram) sensors capable of measuring fluctuations of CO2 in air of the order of plus or minus 1 ppm in a background of 370 ppm is solicited.  The devices must be suitable for launch on ballonsondes or similar such platforms, and therefore must be insensitive to large changes in ambient temperature and pressure.  They must be able to operate on low power (e.g., 9v battery), and have a response time of less than 30 seconds.  

Grant applications are also sought for unique, rapid, and cost-effective methods for measuring the natural carbon isotopic composition of plant, soil, and atmospheric materials.  The idea is to use isotope technology to identify sources and sinks of carbon materials, and to use carbon isotopes to distinguish relative carbon exchanges between terrestrial or aquatic media and the atmosphere.  New isotope approaches and technology should demonstrate a quantitative capability for both estimating and distinguishing carbon flux among atmosphere, biosphere, and soil components of natural and manipulated carbon cycles.  

Proposed new measurements of terrestrial biota and soil must be accomplished by in situ and/or non-invasive means and/or remote sensing of organic carbon forms across a range of temporal scales (from seconds to days) and spatial scales (from millimeters to kilometers), depending on the system properties being observed. Instruments must be portable and deployable in remote locations, and must not adversely impact the site of deployment.  The term "remote sensing" means that the observation method is physically separated from the object of interest.  Research that develops unique surface-based observations and uses them for calibration/interpretation of other remotely derived data is of interest; however, except for potential application of CO2 sensor via ballonsonde, other methods of remote sensing data acquisition by airborne or satellite platforms will not be considered.

References:

1.      Allen, L. H., Jr., et al., eds., “Advances in Carbon Dioxide Effects Research,” American Society of Agronomy, Special Publication No. 61, Madison , WI:  ASA, CSSA, and SSSA, 1997.  (ISBN: 0-89118-133-4) (Abstract, table of contents, and ordering information available at: http://www.asa-cssa-sssa.org/cgi-bin/Web_store/web_store.cgi?page=special_publications_asa.html&cart_id=6208152_31794)

2.      Daniels, D. J., Surface Penetrating Radar, London:  The Institution of Electrical Engineers, 1996.  (ISBN: 0-85296-862-0)

3.      Hall, D. O., et al., eds., Photosynthesis and Production in a Changing Environment:  A Field and Laboratory Manual, New York:  Chapman & Hall, 1993.  (ISBN: 0412429004)

4.      Hashimoto, Y., et al., eds., Measurement Techniques in Plant Science, San Diego:  Academic Press, Inc., 1990.  (ISBN: 0-12-330585-3)

5.      McMichael, B. L. and Persson, H., eds., Plant Roots and Their Environment:  Proceedings of an ISRR Symposium, Uppsala , Sweden , August 21-26, 1988 , New York:  Elsevier, 1991.  (ISBN: 0-444-89104-8)

6.      Nelson, D. W. and Sommers, L. E., “Total Carbon, Organic Carbon, and Organic Matter,” Methods of Soil Analysis, Part 3:  Chemical Methods, pp. 961-1010, Madison , WI:  Soil Science Society of America, 1996.  (ISBN: 0-89118-825-8)

7.      Rozema, J., et al., eds., CO2 and Biosphere, Hingham, MA:  Kluwer Academic Publishers, 1993.  (ISBN:  0792320441) (This publication is part of a monographic series, Advances in Vegetation Science, Vol. 14 - ISSN: 0168-8022) (Reprinted from Vegetation, 104/105, January 1993 - ISSN: 0042-3106. Now called Plant Ecology - ISSN: 1385-0237)

8.      Swift, R., “Organic Matter Characterization,” Methods of Soil Analysis, Part 3: Chemical Methods, pp. 1011-1070, Madison, WI:  Soil Science Society of America, 1996.  (ISBN:  0-89118-825-8)

 

22. BIOLOGICAL CARBON SEQUESTRATION RESEARCH AND TECHNOLOGY

The burning of fossil fuels adds carbon to the atmosphere, principally in the form of carbon dioxide, and the potential environmental impacts have made carbon management an international concern.  There is increasing national and international interest in enhancing natural mechanisms to slow the rate of atmospheric CO2 increase, or in developing new approaches to mitigate the current atmospheric rise in CO2 levels.  A DOE report on carbon sequestration science and technology (see reference 2) describes research needs and technology requirements for sequestering carbon by ocean and terrestrial systems, including a discussion of advanced biological processes and chemical approaches.  This topic focuses on biological mechanisms that offer the potential to slow the rate of atmospheric CO2 increase, convert carbon into relatively stable organic or inorganic forms, and utilize biosystems to achieve the simultaneous production of fuel or chemicals while sequestering carbon.   Research is needed to identify and quantify mechanisms for CO2 transformation at rates that will lead to the long term fixation or sequestration of large quantities of carbon (i.e., where10,000 to 100,000 tonnes or more of carbon per year transformed or fixed is considered significant) when applied to either natural (e.g., unmanaged terrestrial ecosystems) or managed biosystems.

Plants are known to fix CO2 into biomass, and various terrestrial and aquatic microbial populations also fix greenhouse gases (CO2, CH4 and CO), either incorporating them into biomass or transforming them to potentially useful organic compounds.  Biochemical pathways have been identified in unicellular microorganisms that carry out the following transformations:  (1) CO2 to CH4 (methanogens); (2) CO2 to organic material, i.e., biomass and/or other potentially useful byproducts (nonmethanogenic autotrophs); (3) CO to organic material (various, including carboxydotrophs, and methylotrophs); and (4) CH4 to organic material (methanotrophs).  These desired activities are characteristic of bacteria, archaeae, unicellular algae, and yeasts.  The useful microorganisms may be either photosynthetic (as are algae and blue-green bacteria) or nonphotosynthetic (most microorganisms). 

In some cases, microbial carbon fixation activity leads to the direct production of long-chain hydrocarbons (up to C36).  Both CH4 and hydrocarbons are useful fuels, as is H2, which is also produced by various microorganisms such as autotrophs.  This H2-producing activity may occur directly via carbon fixation, or indirectly by the reductive biotransformation of organic carbon-sequestration products by other microbes.  Alternatively, some micro-organisms that are capable of fixing CO2, CH4, or CO, may instead, when coupled to other fermentative microbial cultures (e.g., bacteria or yeast) in a two-stage process, transform the gaseous substrates to useful alcohols (e.g., ethanol or 2,3-butanediol).  Other two-stage processes can produce oxychemicals that are themselves valuable commodity chemicals (acetate, lactate, acetaldehyde, acetoin, etc.).

Grant applications must provide for a systematic evaluation of proposed biological mechanisms and carbon sequestration systems.  Estimates of the amount of CO2 transformed also must be provided, and any assumptions concerning quantities and conditions for carbon fixation and sequestration must be clearly defined.  Feasibility tests (analytical, bench, or field) performed in Phase I must demonstrate that the proposed approach, when scaled up, could theoretically result in a significant rate reduction in atmospheric CO2 concentration, significant sequestered amounts of carbon, or the production of significant amounts of value-added food, fiber, chemicals, construction materials, or fuel products.  Phase I should provide preliminary data on prospective rates and quantities of enhanced carbon transformation and sequestration with more comprehensive and peer-reviewed data sets developed in Phase II.  Grant applications proposing only computer modeling without improvements in physical mechanisms or field approaches will not be considered. 

The facilities and expertise of the DOE Consortium for Research on Carbon Sequestration in Terrestrial Ecosystems (CSITE) can be made available to potential SBIR applicants to this topic.  The CSITE is a consortium based at Oak Ridge National Laboratory (ORNL), Pacific Northwest National Laboratory (PNNL), and Argonne National Laboratory (ANL).  The co-directors are Gary Jacobs (ORNL/e-mail: jacobsgk@ornl.gov) and Blaine Metting (PNNL/e-mail: fb_metting@pnl.gov).  Scientists at Texas A&M University, Colorado State University, the University of Washington, North Carolina State University, and the Joanneum Research Institute in Austria can also provide support to potential applicants.  The DOE also supports carbon sequestration research at the National Energy Technology Laboratory (NETL).  Grant applications are sought only in the following subtopics:

a.  Plant and Soil Sequestration of Carbon - Terrestrial vascular plants effectively capture CO2 from the atmosphere and produce organic compounds, which sustain productivity of the Earth’s ecosystems.  Some of the fixed carbon is sequestered in soils or sediments and in wood products of terrestrial ecosystems.   Woody species, for example, sequester carbon as lignocellulose, which is a stored product for the lifetime of the tree.  Also, above- and below-ground biomass carbon contributes to soil organic matter, which may store carbon for long periods of time.  Grant applications are sought to identify and quantify the biological pathways and mechanisms leading to increased quantities of carbon sequestration by biotic and soil components of terrestrial ecosystems.  Areas of particular interest include:  (1) research on plant metabolic pathways or mechanisms that allow increased CO2 fixation rates, achieved through conventional molecular or traditional genetic means, and leading to overall productivity increases; (2) novel technologies for managing vegetation (such as cost-effective nutrient management, forest regeneration, and ecosystem modification) to enhance carbon uptake and retention, thereby significantly increasing CO2 fixation and C storage; (3) techniques for increasing the fraction of recalcitrant organic compounds produced during natural microbial conversion of plant biomass in soils, resulting in increased long-term C-storage; and (4) measurement techniques that would allow for the validation of technologies developed to enhance net long-term C sequestration in man-made and natural environments.

Proposed approaches should exhibit a capability to increase, or to measure increases of, carbon fixation or sequestration by at least 1 tonne per hectare per year.  Grant applications should provide information about rates and quantities of carbon fixation or sequestration enhancement by the proposed technologies.  Phase I must demonstrate basic feasibility and efficacy of proposed sequestration mechanisms, with the larger field-scale applications designed and tested in Phase II.

b.  Development of Enhanced Carbon-Sequestering Biosystems - Previously-identified, naturally-occurring cultures have been shown to fix carbon along with the production of fuels or commodity chemicals.  Grant applications are sought to further optimize these processes via one or more biotechnological techniques (strain improvement including the use of genetic engineering, culture medium optimization, novel reactor design, or improved reactor operation).   Desired improvements should increase carbon sequestration rates by at least 50%.  Grant applications should focus on:  (1) the development of microbial cultures with improved carbon-sequestering abilities, (2) the development of improved reactors or their operating protocols configurations that support improved growth, or (3) a combination of (1) and (2).  Phase I must demonstrate the improved carbon sequestration biosystem(s) on a bench scale.  Larger, pilot-scale demonstrations would be tested in Phase II.

c.  Production of Commodity Chemicals - Grant applications are sought to identify and characterize new one- or two-stage biosystems capable of fixing carbon along with the production of nonfuel commodity chemicals – acids, alcohols, and/or aldehydes.  (“Stage” refers to a discrete microbial culture containing either a single organism or a consortium – two-stage cultures are operated sequentially.  “Biosystem” refers to a culture grown in a bioreactor.)  Although a single biosystem would not be expected to perform all of these tasks, a single stage biosystem that produced large amounts of biosolids would still be of interest – provided that the biosolids could be used as petrochemical-sparing feedstocks for chemical production (either via traditional methods or as agricultural soil amendments via composting).  For biosolids produced as chemical feedstocks, no special attributes are required.  However, biosolids produced for agricultural purposes must be more resistant to subsequent biodegradation than typical cellulosic materials.  Areas of interest include (1) the identification of new, naturally-occurring microorganisms with acceptable carbon-sequestering abilities; (2) the identification of novel configurations for growth of useful microorganisms at the expense of greenhouse gases, or (3) a combination of (1) and (2). 

Proposed approaches based on these new biosystems must show significant potential for rapidly fixing large quantities of carbon.  An acceptable carbon sequestration rate would be the consumption of at least 5 grams of carbon (expressed on an atom basis) per gram cell dry weight per hour, at an ambient temperature of at least 15 degrees C.  This rate corresponds to a generation time of no less than approximately 24 hours.  In the case of chemical production, the overall process must demonstrate a net CO2 consumption through the formation of biomass as a by-product.  (It is understood that CO2 production, through normal cell metabolism, is unavoidable, but significant net yield of fixed carbon should be the design objective and performance measure.)  Phase I must demonstrate basic feasibility and efficacy of the proposed carbon sequestration mechanisms on a bench scale.  Larger, pilot-scale demonstrations with emphasis on yield performance would be tested in Phase II.

d.  Production of Fuel Chemicals - Grant applications are sought to identify and characterize new one- or two-culture biosystems capable of fixing carbon along with production of fuel chemicals – H2, CH4, fuel hydrocarbons including oils, or fuel alcohols such as ethanol.  Areas of interest include:  (1) the identification of new, naturally-occurring microorganisms with acceptable carbon-sequestering abilities, (2) the identification of novel configurations for growth of useful microorganisms at the expense of greenhouse gases, or (3) a combination of (1) and (2).  It is understood that no single biosystem would be capable of performing all of these tasks.

Proposed approaches based on these new biosystems must show significant potential for rapidly fixing large quantities of carbon.  An acceptable carbon sequestration rate would be the consumption of at least 5 grams of carbon (expressed on an atom basis) per gram cell dry weight per hour, at an ambient temperature of at least 15 degrees C.  This rate corresponds to a generation time of no less than approximately 24 hours.  In the case of chemical production, the overall process must demonstrate a net CO2 consumption through the formation of biomass as a by-product.  (It is understood that CO2 production, through normal cell metabolism, is unavoidable, but significant net yield of fixed carbon should be the design objective and performance measure.)  Phase I must demonstrate basic feasibility and efficacy of the proposed carbon sequestration mechanisms on a bench scale.  Larger, pilot-scale demonstrations with emphasis on yield performance would be tested in Phase II.

References:

1.      Belaich, J. P., ed., Microbiology and Biochemistry of Strict Anaerobes Involved in Interspecies Hydrogen Transfer, New York:  Plenum Press, 1990.  (ISBN: 0-306-43517-9) (FEMS Symposium)

2.      Greenhouse Gases, Global Climate Change and Energy , U.S. DOE National Energy Information Center, 2002.  http://www.eia.doe.gov/oiaf/1605/ggccebro/chapter1.html

3.      Lal, R., ed., Soil Processes and the Carbon Cycle, Boca Raton:  CRC Press, 1998.  (ISBN: 0-8493-7441-3)

4.      Ratledge, C., ed., Biochemistry of Microbial Degradation, Netherlands:  Kluwer Academic Publishers, 1994.  (ISBN: 0-7923-2273-8)

5.      References from Technical Sessions 3C, 4C, 5C, First National Conference on Carbon Sequestration, Washington , DC, May 14-17, 2001.   (Available on the Web at:  http://www.netl.doe.gov ) (Select “Publications” from menu on left.  Scroll down and select “Conference Proceedings.” Scroll down and select “Previous Conference Proceedings.”  A list of conferences in chronological order will appear, with the most recent loaded first.  Scroll down and select conference title.)

6.      Reichle, D., et al., Carbon Sequestration Research and Development, Washington, DC: U.S. Department of Energy Offices of Science and Fossil Energy, 1999.  (Full text available at: http://www.osti.gov/energycitations/.  Using “Basic Search,” search “Bibliographic Info” for title, above.)

7.      Rosenberg, N. J., et al., eds., “Carbon Sequestration in Soils:  Science, Monitoring and Beyond,” Proceedings of the St. Michaels Workshop, St. Michaels, MD, December 1998, Columbus, OH:  Battelle Press, 1999.  (ISBN: 1-57477-084-5) (Available from Battelle Press.  Telephone: 1-800-451-3543.  Web site: http://www.battelle.org/bookstore.  Search by author.)

8.      Rozema, J., et al., eds., CO2 and the Biosphere, Boston, MA :  Kluwer Academic Publishers, 1993.  (ISBN: 0792320441) (Also in Advances in Vegetation Science, Vol. 14. ISSN: 0168-8022)

9.      Various articles from “Natural Sinks of CO2:  Proceedings of the Palmas Del Mar Workshop, Palmas Del Mar, Puerto Rico , February 24-27, 1992 ,” Water, Air and Soil Pollution, 64(1-2), 1992.  (ISSN: 0049-6979)

 

 

23. MEDICAL SCIENCES

The Department of Energy (DOE) Medical Sciences program covers a broad range of energy-related technologies including nuclear medicine and advanced imaging instrumentation.  DOE is interested in innovative research involving medical technologies to facilitate and advance the current state of diagnosis and treatment of human disorders.

Principles of physics, chemistry, and engineering are being employed to advance fundamental concepts dealing with human health, to utilize the study of molecular interactions for a better understanding of organ function, and to develop innovative biologics, materials, processes, implants, devices, and informatics systems for the prevention, diagnosis, and treatment of disease and for improving human health.  The DOE Advanced Medical Instrumentation program seeks to capitalize on the unique physical sciences and engineering capabilities at the DOE's national laboratories to develop new technologies that will have a significant impact on human health.

With respect to nuclear medicine, current areas of research include the development of:  (1) radiopharmaceuticals as radiotracers to study in vivo chemistry, metabolism, cell communication, and gene expression in normal and disease states, and as therapeutic agents; and (2) new radionuclide imaging systems.  Grant applications are sought only in the following subtopics:  

a.  Development of Novel Probes for Biomedical Applications - Grant applications are sought to develop improved and new probes (fluorescent, electron dense, vibrational tags, etc.) with optimum physico-chemical properties for visualization, tracking, assembly, and disassembly of the multiprotein complexes that execute cellular functions and govern both cell form and components. These multifunctional probes would measure structure, including post-translational modification, and would function in real time.  Novel probes are also needed to enable rapid visualization and quantification of intracellular processes with high spatial resolution.  Probes should be selective, non-perturbative, resistant to degradation, and have unique spectroscopic signatures.  Grant applications must present unambiguous experimental systems to validate probe performance and demonstrate that the research will ultimately result in new sensors for medical applications.  Several DOE national laboratories have developed considerable expertise in this research area and are available for possible collaboration.  

b.  Radiopharmaceutical Development for Radiotracer Diagnosis and Targeted Molecular Therapy - Grant applications are sought to develop:  (1) radiolabeled compounds that could have applications as radiotracers for radionuclide imaging technologies such as positron emission tomography and single photon emission computed tomography; (2) improved and simplified production of radiolabeled compounds through the use of mini-accelerator technology or automated radiochemical analysis/synthesis techniques; and (3) radiopharmaceuticals for targeted molecular therapy.  Of particular interest are radiochemical, synthetic, and combinatorial molecular engineering approaches.  All efforts should ultimately result in a product for nuclear medicine use.  

c.  Advanced Imaging Technologies - Grant applications are sought for new, sensitive, high resolution instrumentation for radionuclide imaging.  The instrumentation should advance the application of radiotracer methodologies for imaging molecular biological functions including cell communication and gene expression in vivo.  Areas of interest include the development of:  (1) new detector materials and detector arrays for both positron emission and single photon emission computed tomography; (2) software for rapid image data processing and image reconstruction; and (3) methods of integrating in vitro and in vivo instrumentation technologies for real time molecular imaging of biological function and for new drug development and utilization.

References:

1.      Klaisner, L.,  Nuclear Science Symposium and Medical Imaging Conference: 1993 IEEE Conference Record, IEEE Nuclear and Plasma Sciences Society, 2000.  (ISBN: 0-7803-1488-3)  

2.      Reba, R. C., ed., “Introduction,” Journal of Nuclear Medicine, Supplement, 36(6):1S, June 1995.  (ISSN: 0161-5505)  

3.      Wagner, H. N., et al., eds., Principles of Nuclear Medicine, 2nd ed., Philadelphia, PA:  W. B. Saunders, 1995.  (ISBN: 0-7216-9091-2) (Each section contains list of references)  

4.      “Supplementary Information,” at Web site for DOE Office of Science, Notice 03-14:  Radiopharmaceutical and Molecular Nuclear Medicine Science Research - Medical Applications Program.  (Available at:  http://www.sc.doe.gov/grants/Fr03-14.html.  Scroll down page to text under “SUPPLEMENTARY INFORMATION.”)  

5.      Vera, D. R. and Eckelman, W. C., “Receptor 1980 and Receptor 2000: twenty years of progress in receptor-binding radiotracers,” Nuclear Medicine and Biology, 28(5):475-476, July 2001.  (ISSN: 0969-8051) (Abstract and ordering information available at ScienceDirect Web site:  http://www.sciencedirect.com/.  Using “Quick Search,” search for article title within “All Full-text Sources.”)  

6.      Cherry, S. R., et al., Physics in Nuclear Medicine, 3rd ed., Philadelphia, PA:  W.B. Saunders, June 2003.  (ISBN: 072168341X)  

7.      Sandler, M. P., et al., eds., Diagnostic Nuclear Medicine, 4th ed., Philadelphia, PA:  Lippincott, Williams, and Wilkins, October 2002.  (ISBN: 0781732522)

 

  24. GENOMES TO LIFE, AND RELATED BIOTECHNOLOGIES

 

The Department of Energy (DOE) supports research to acquire a fundamental understanding of biological and environmental processes.  This includes the display of genomes as DNA sequences, the functional characterization of gene products from humans and useful organisms, structural biology research using beam lines at synchrotron sources and other facilities, computational genomics, and the development of integrating information systems. This topic is focused on the goals of the Genomes To Life (GTL) program, namely, to develop a detailed understanding of the molecular machines of the cell and of their networking.  Microbes with capabilities that can further several DOE programmatic missions are being used as the current subjects for these studies. The knowledge thus gained would enable both the public and private sectors to apply genome knowledge to the production of energy sources, promote environmental applications such as bioremediation and carbon sequestration, promote cleaner industrial processes using biotechnology, and enable increasingly effective computational models of the microbial cell.  For some of the subtopics below, capabilities already exist in a few laboratories, but commercial involvement will be needed before the technology can be exported to the broader research community.  Grant applications are sought only in the following subtopics:

 

a. Genome Scale Reagent Sets – There is an increasing availability of genomes as sequenced chromosomes with their constituent genes.  These genes number in the thousands for bacteria and in the 10-100 thousand range for higher organisms.  Each gene may give rise to numerous distinct mRNAs and proteins, through processes of alternative RNA splicing and post-translational modifications.  Micro-arraying methodologies are enabling highly parallelized interrogations of these huge macromolecule collections. However, production and management systems are required to assure the availability of the numerous analytical reagents that are needed in small quantities.  Grant applications are sought for:  (1) systems that will produce thousands of affinity reagents (oligo-nucleotides, synthetic genes, antibodies, and other affinity reagents) in pico-molar quantities; (2) miniaturized delivery systems for such reagent sets; (3) reagent sets for quantitation of RNA splicing; and (4) candidate interferring RNAs for testing as regulatory agents.

 

b.   Proteomics – A number of proteomics tasks are being pursued to achieve the goals of the GTL program.  These tasks include high throughput production and purification of proteins, correlation of proteins with the genes encoding their primary structure, identification of protein isoforms encoded by the same gene, identification of memberships in functional complexes of proteins, and identification of the variations of proteome constituents under change to useful physiological states.  However, a number of obstacles are preventing the accomplishment of these tasks.  For example, several host-vector systems are available for the production of proteins encoded in a hyper-expressed source gene; yet, for some source genes, the proteins fail to fold into physiologically effective three-dimensional conformations (entrapment in insoluble inclusion bodies is one cause of such failures).  Another difficulty is that proteins targeted to membranes are problematic.  Lastly, the lack of affinity reagents that bind to proteins in their native conformations adversely impacts structure, protein association, and function analyses.  Therefore, grant applications are sought for the improved recovery and analysis of effective proteins.  Areas of interest include:  (1) the production of solubilized proteins in active confirmations with or without post-translational modifications; (2) the development of synthetic membranes or nano-structures enabling analyses of membrane proteins; (3) the development of improved affinity reagents; and (4) the development of reporting labels to enable the multiplexing of assays.

 

c.    Instrumentation for Single Macromolecule Analysis and Control – Over the last decade, research laboratories have made substantial progress in developing instrumentation for the interrogation and manipulation of single macromolecules.  Techniques include the use of optical-laser tweezers, atomic force microscopy, and single molecule fluorescence microscopy.  Although the effectiveness of these techniques has improved steadily and the instrumentation is now robust, most of these single-molecule, biophysics instruments are locally built.  The lack of commercial support has severely hindered the export of these technologies to the broader user community.  Grant applications are sought to expand the commercialization of techniques, instrumentation, and software systems so as to enable the broader usage of single macromolecule analysis methods.

 

d.  Informatics – The development of an effective computational model of the cell not only would contribute to the GTL program but also would have numerous applications, including the preliminary processing of genome scale data sets being generated by experimental groups.  Grant applications are sought to improve one or more of the component software packages that have already been developed by laboratory groups, in order to enhance user friendliness and thereby support their broad export to the biologist community.  Grant applications are also sought to develop novel software in support of cellular modeling tasks.  Of particular interest are approaches related to: (1) systems biology, (2) the processing of proteomics and metabolomics data sets, (3) improved integration and or querying of heterogenous data sets, and (4) the automated development of cellular metabolic models from data sets on newly studied microbes.

References:

1.      “Bioscience:  A Most Singular Study [single molecule methods],” Berkeley Lab Highlights, Berkeley Lab Research Review, Special Issue, 23(3), Fall 2000.  (Available at: http://www.lbl.gov/Science-Articles/Research-Review/Highlights/2000/stories/bioscience/singular2.html  

2.      Parvin, B., et al., “BioSig:  An Imaging Bioinformatic System for Studying Phenomics,” Computer, 35(7):65-71, July 2002.  (ISSN: 0018-9162) (To order, see IEEE Computer Society Web site at:  http://www.computer.org/computer/co2002/r7toc.htm)  

3.      “Post Sequencing Research Challenges,” Human Genome News, 11(1-2), Washington , DC:  U.S. DOE Human Genome Program, November 2000.  (Available at: http://www.ornl.gov/hgmis/publicat/hgn/v11n1/07post.html)  

4.      DOE Joint Genome Institute, U.S. DOE Office of Biological and Environmental Research (OBER)
http://www.jgi.doe.gov, http://www.ornl.gov/TechResources/Human_Genome/publicat/2003jgi/index.htm  

5.      Genomes To Life:  Biological Solutions for Energy Challenge, U.S. DOE OBER/Office of Advanced Scientific Computing Research, http://doegenomestolife.org/  

6.      Research Abstracts from the DOE Genome Contractor-Grantee Workshop IX, Oakland, CA, January 27-31, 2002, U.S. DOE OBER, http://www.ornl.gov/hgmis/publicat/02santa/index.html  

7.      Research Topics, U.S. DOE OBER, http://www.sc.doe.gov/production/ober/restopic.html  

8.      U.S. DOE Microbial Genome Program, U.S. DOE OBER, http://www.ornl.gov/microbialgenomes/  

 

25. MEASUREMENT/MONITORING AND CHARACTERIZATION TECHNOLOGIES FOR THE SUBSURFACE ENVIRONMENT

The characterization and monitoring of soils, subsurface sediments, and ground water are important elements of Department of Energy (DOE) research efforts.  Objectives include determining the fate and transport of contaminants generated from past weapons production activities and from current energy production activities, evaluating the risks of energy-related contaminants to human health and ecosystems, and assessing and controlling processes to remediate contaminants.  Grant applications submitted to this topic must detail why and how proposed in situ field technologies will substantially improve the state-of-the-art and must include bench tests to demonstrate the technology.  Projected dates for likely operational field deployment must be clearly stated.  New or advanced field technologies that operate under field conditions with mixed/multiple contaminants and that can be deployed in 2-3 years will receive selection priority.  Claims of commercial potential for proposed technologies must be supported by information such as endorsements from relevant industrial sectors, market analysis, or identification of commercial spin-offs.  Grant applications that propose incremental improvements or enhancements to existing technologies are not of interest and will be declined, as will enhancements to predictive models.
 
For some of the following subtopics, collaboration with government laboratories or universities may speed the development of the measurement or monitoring technology.  For example, the Environmental Molecular Sciences Laboratory (EMSL), a DOE scientific user facility located at the Hanford Site in Richland, WA, can provide analytical instrumentation and capabilities with direct application to sensor development and testing.  Potential applicants for subtopics a, c and d are invited to review the web site for the Interfacial Chemistry and Engineering group (http://www.emsl.pnl.gov/homes/ice/) and the Interfacial and Nanoscale Science Facility (http://www.emsl.pnl.gov/capabs/insf.shtml) at the EMSL.  For subtopic b, potential applicants are invited to review the web site for the Savannah River Ecology Laboratory (SREL), located at the Savannah River Site in Aiken, SC.   In addition to the potential sources for collaboration, scientists at SREL are involved in several on-going phytoremediation research projects (see references).  Grant applications must describe, in the technical approach or work plan, the purpose and specific benefits of any proposed teaming arrangements.  Grant applications are sought only in the following subtopics:

a.  Real-Time, In Situ Measurements in Soils, Subsurface Sediments, or Groundwater – 
 There is a need for sensitive, accurate, and real-time monitoring of geochemical and hydrogeologic processes and their interactions with microorganisms in contaminated soils, sediments, or ground water environments (hereafter referred to as the subsurface).  The use of highly sensitive monitoring devices in the subsurface (in situ) would allow for low-cost field deployment in remote locations and an enhanced ability to monitor processes at finer levels of resolution.  For this subtopic, the following radionuclides and metals are of interest:  americium, arsenic, cesium, chromium, cobalt, mercury, plutonium, strontium, technetium, and uranium.  In addition, chelators such as ethylenediaminetetraacetic acid (EDTA), nitrilotriacetic acid (NTA), and catechol derivatives (e.g., disodium-1.2-dihydroxybenzene-3,5,-disulfonate) will be considered.  Grant applications that address other contaminants will be declined.

Grant applications are sought to develops sensors and systems to: (1) detect hydrogeologic and biogeochemical processes that control the transport, dispersion, or transformation of contaminants (particularly metals and radionuclides) in the subsurface; (2) determine characteristics such as concentration, movement, or speciation of contaminants in the subsurface; and/or (3) measure mass-transfer processes and rates within and among individual pores in the subsurface.  Grant applications must provide convincing documentation (experimental data, calculations, etc.) that the sensing method is both highly sensitive (i.e., low detection limit) and highly selective to the target analyte (i.e., immune to anticipated physical/chemical/biological interferences.)  Approaches that leave significant doubt regarding sensor functionality in realistic multi-component samples will be excluded from consideration.

Grant applications are also sought for integrated sensing and controller/signal processing systems for autonomous or unattended applications of the above measurement needs.  Innovative integration of components (such as micro-machined pumps, valves, and micro-sensors) into a complete sensor package with field applications in the subsurface will be considered responsive to this subtopic.

Approaches of interest could include fiber optic, solid-state, chemical, silicon micro-machined sensors, or biosensors (devices employing biological molecules or systems in the sensing elements) that can be used in the field.  Biosensing systems may incorporate, but are not limited to, whole cell biosensors (i.e., chemoluminescent or bioluminescent systems), enzyme or immunology-linked detection systems (e.g., enzyme-linked immunosensors incorporating colorimetric or fluorescent portable detectors), lipid characterization systems or DNA/RNA probe technology with amplification and hybridization.  As substantial progress has been made in fiber optics and chemical sensing technology in the last decade, grant applications that propose minor adaptations of readily available materials/hardware, and/or can not demonstrate substantial improvements over the current state-of-the-art, are not of interest and will be declined.

b. Phytoremediation and Mycoremediation Monitoring of Soils and Sediments – New approaches to the restoration of contaminated areas – phytoremediation and mycoremediation – are being considered for use at DOE sites.  Phytoremediation involves the use of living plants to extract and remove metals, radionuclides, and organic contaminants from soils, subsurface sediments, or ground water.  Mycoremediation exploits the natural ability of fungi to extract contaminants from soils and concentrate them in fungal tissues above ground.  Innovative methods are needed to monitor the performance or effectiveness of these and other bioremediation processes, particularly at the field scale.  Performance or effectiveness monitoring will be needed to determine whether cleanup levels have been met.  For this subtopic, the contaminants of interest include a number of metals and radionuclides (americium, arsenic, cesium, chromium, cobalt, mercury, plutonium, strontium, technetium and uranium), chelators, chlorinated organics, and ketones.

Grant applications are sought to develop technology for monitoring the following parameters of plants and fungi used in phytoremediation and mycoremediation, respectively: (1) the concentration and partitioning of contaminants in plant roots (sorbed or bound and internal), shoots, stems, and leaves; (2) the concentration and partitioning of contaminants in fungal vegetative vs. aerial mycelium; (3) root or mycelial depth, distribution, density, and diameter: (4) mortality, health, and vigor of plants or fungi (stress indicator); (5) photosynthetic rates in plants; or carbon assimilation rates in fungi; (6) leaf area and evapotranspiration, in plants; or fruiting body dimensions in fungi; and/or (7) plant or fungal tolerance or sensitivity to contaminants of interest.

Potential monitoring technologies could include any of the following techniques: (1) spectral reflectance and thermal infrared measurement techniques, (2) laser-induced fluorescence spectroscopy and laser-induced fluorescence imaging, (3) laser-induced breakdown spectroscopy, (4) x-ray fluorescence, (5) ground-penetrating radar measurement, (6) chlorophyll fluorescence measurement, (7) Enzyme-linked immuno-sorbent assay (ELISA)-based, respirometric, or other biochemical measurement of metabolite production, and (8) molecular monitoring of soil and rhizosphere microbiology.  Both remote monitoring and in situ monitoring approaches are of interest.  Proposed technologies should significantly improve the speed, efficiency, and cost of current monitoring methods.  While initial proof of principle experiments may focus on one single contaminant, the technology ultimately must be able to operate under mixed contaminant conditions such as those commonly found at DOE sites.

 

c.  Sensor Technology for Monitoring Tank Waste – Grant applications are sought for the long-term monitoring of gases or liquids released from, or contained within, tanks containing mixtures of contaminants.  Sensors would be used to detect and/or quantify contaminants, or their degradation products, in off-gases, effluents, or other samples.  Sensors could also be used in situ to monitor changes in waste chemistry during storage.  Contaminants of interest include a number of metals and radionuclides (americium, cesium, chromium, cobalt, mercury, plutonium, strontium, technetium, and uranium); anions such as nitrate; chelators; extractants such as tributyl phosphate; chlorinated organics; and ketones.  Relevant wastes are expected to contain more than one type of contaminant; therefore, the sensor technology must be both sensitive and specific for targeted contaminant(s).  Development of robust sensors, capable of use with high-level waste, is encouraged.  However, sensors suitable for use with other waste types (such as low-level, mixed or hazardous) are equally desirable.  

 

d.  In Situ Monitoring Systems to Facilitate the Use of Reactive Barriers - Several DOE sites have plumes in the subsurface that are contaminated with metals, organics, and/or radionuclides. The current approach to remediating these plumes involves pump-and-treat operations, a process that manages, but may not completely eliminate, the risks associated with the plumes.  Another approach, which could be used along with pump-and-treat operations, involves the construction of barriers that react with the contaminant to prevent further migration of the plume contaminants.  The reactions are intended to convert the contaminant(s) into non-mobile form(s) or to degrade the contaminant(s) into non-toxic material(s).  (Additional information on reactive barriers can be found at http://www.gjo.doe.gov/perm-barr/ and http://www.rtdf.org/public/permbarr/default.htm.)  

 

Systems are needed to monitor the performance and integrity of reactive barriers.  The development and deployment of such systems involves numerous challenges.  Technical challenges include determining appropriate indicator parameters for both the barrier and the contaminant plume of interest, ensuring the longevity and continued integrity of the monitoring system itself, identifying appropriate ways of communicating monitoring data and other information to and from the system, and determining reliable maintenance strategies and schedules for the systems.  Additional challenges involve replacing conventional monitoring practices, often based on laboratory analysis of manually obtained samples, with strategies based on the use of automated, remote monitoring systems, and achieving acceptance of these new systems and strategies by regulators and stakeholders.

 

Grant applications are sought to develop in situ remote monitoring systems for reactive barriers.  Proposed systems should include:  (1) autonomous reporting via secure wireless communications to a central information processing facility; (2) low power requirements, preferably using on-site solar panels; (3) no need, or at most minimal need, to replenish reagents or other consumables; (4) zero, or at most minimal, production of secondary wastes; and (5) a capacity for self-testing and autocalibration.  Methods for detecting the condition and/or efficacy of the barrier itself, rather than just the targeted contaminants are of particular interest; an ideal system would provide sufficient advance notice of impending barrier failure so that actions could be taken to prevent the failure.  Of particular interest are monitoring systems for barriers intended to deal with any of the halogenated organic constituents, hazardous inorganic species (e.g., RCRA metals) and radionuclides.  Grant applications should clearly identify the types of barriers and contaminants being addressed, provide an explanation of the fundamental scientific principles underlying the proposed method(s), and identify the detection/sensitivity limits for the monitoring systems.  Communications support for monitoring systems is available and, therefore, is not sought in this topic.

References:

 

1.      Dandridge, A. and Cogdell, G. B., “Fiber Optic Sensors - Performance, Reliability, Smallness,” Sea Technology, 35(5):31, May 1994.  (ISSN: 0093-3651)

 

2.      Egorov, O. B., et al., “Radionuclide Sensors Based on Chemically Selective Scintillating Microspheres:  Renewable Column Sensor for Analysis of 99Tc in Water,” Analytical Chemistry, 71(23):5420-5429, December 1, 1999.  (ISSN: 0003-2700)

 

3.      Natural and Accelerated Bioremediation Research Program Plan, Washington , DC: U.S. DOE Office of Biological and Environmental Research, September 1995.  (Report No. DOE/ER -0659T) (NTIS Order No. DE96000157) (Full text available at: http://www.osti.gov/bridge)

 

4.      Raskin, I. , et al., Phytoremediation of Toxic Metals:  Using Plants to Clean Up the Environment, New York:  John Wiley & Sons, November 1999.  (ISBN: 0471192546)

 

5.      Research Needs in Subsurface Science:  U.S. Department of Energy's Environmental Management Science Program, Washington, DC: National Academy Press, 2000.  (ISBN: 0309066468) (Full text available at: http://www.nap.edu.  Search under “Search all Text” for the words “Subsurface Science.”)

 

6.      Riley, R. G., et al., Chemical Contaminants on DOE Lands and Selection of Contaminant Mixtures for Subsurface Science Research, Washington, DC:  U.S. Department of Energy, April 1992. (Report No. DOE/ER- 0547T) (NTIS Order No. DE92014826) (Available from NTIS. Telephone: 1-800-553-6847. Web site: http://www.ntis.gov/support/orderingpage.htm)

 

7.      Rivera H., et al., “A Microsensor to Measure Nanomolar Concentrations of Nitric Oxide,” Sensors, 11(2):72-73, February 1994.  (ISSN: 0746-9462)

 

8.      Publications by EMSL Scientists and External Users of the William R. Wiley Environmental Molecular Sciences Laboratory, 2003:  http://www.emsl.pnl.gov:2080/docs/

 

9.      Oak Ridge Operations (ORO) Technology Needs Database Web site, U.S. Department of Energy, 2001:  http://www.em.doe.gov/techneed/

 

10.  Nevada Test Site (NTS) Technology Needs Web site,  U.S. Department of Energy, 2001:  http://www.nv.doe.gov/programs/envmgmt/blackmtn/TDSTCGTechnologyNeeds.htm

 

11.  Idaho National Engineering and Environmental Laboratory (INEEL) Science and Technology Needs Web site, U.S. Department of Energy, 2001:  http://www.inel.gov/st-needs/

 

12.  Fact Sheet on Phytoremediation Research at the Savannah River Ecology Laboratory (SREL), 2002:  http://www.uga.edu/srel/Fact_Sheets/phytoremediation.htm.  (The primary point of contact is currently Dr. Lee Newman.  See:  http://www.uga.edu/srel/faculty.htm)

 

13.  A National Roadmap for Vadose Zone Science and Technology , U.S. DOE Idaho National Engineering and Environmental Laboratory, August 2001:  http://www.inel.gov/vadosezone/

 

14.  U.S. DOE Grand Junction Office, Uranium Mill Tailings Remedial Action (UMTRA) Ground Water Project Web site, 2003: http://www.gjo.doe.gov/ 

 

15.  Natural and Accelerated Bioremediation Research (NABIR) Program activities at UMTRA sites Web site, 2003:  http://www.pnl.gov/nabir-umtra/index.stm 

 

16.  CLU-IN:  Hazardous Waste Clean-Up Information Web site, Environmental Protection Agency, Technology Innovation Office, 2003:  http://www.clu-in.org/